RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00692 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00692 Molecule name [?]: MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO- CRYSTAL STRUCTURE OF THE ARCHAEAL SRNP INTIA Source [?]: RCSB Protein Data Bank Source ID [?]: 1RLG Reference [?]: T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI. MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTIONS; COCRYSTAL STRUCTURE OF ARCHAEAL L7AE AND A BOX C/D RNA.. STRUCTURE V. 12 807 2004 ASTM STRUE6 UK ISSN 0969-2126 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ARCHAEOGLOBUS FULGIDUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 50 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 40

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 20 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -3.3 Average estimated free energy [?]: -5.6 Minimum estimated free energy [?]: -7.9

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 3 Average number of free bases in bulge loops [?]: 1.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 8 Total number of AG non-canonical base pairs: 6 Total number of UU non-canonical base pairs: 2

Pseudoknot features

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