RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00721
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Format:
Molecule ID [?]:PDB_00721
Molecule name [?]:SOLUTION STRUCTURE OF THE S. CEREVISIAE U6 INTRAMOLECULAR STEM LOOP (ISL) RNA AT PH 5.7
Source [?]:RCSB Protein Data Bank
Source ID [?]:1SYZ
Reference [?]:N.J.REITER,H.BLAD,F.ABILDGAARD,S.E.BUTCHER. DYNAMICS IN THE U6 RNA INTRAMOLECULAR STEM-LOOP: A BASE FLIPPING CONFORMATIONAL CHANGE.. BIOCHEMISTRY V. 43 13739 2004 ASTM BICHAW US ISSN 0006-2960
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:24
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00141, PDB_00177, PDB_00218
Number of domains [?]:1
Number of unpaired bases [?]:4
Number of paired bases [?]:20

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:10
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-5.4
Average estimated free energy [?]:-7.1
Minimum estimated free energy [?]:-8.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:1

Pseudoknot features



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