RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00722 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00722 Molecule name [?]: MECHANISM OF CCA-ADDING ENZYMES SPECIFICITY REVEALED BY CRYSTAL STRUCTURES OF TERNARY COMPLEXES Source [?]: RCSB Protein Data Bank Source ID [?]: 1SZ1 Reference [?]: Y.XIONG,T.A.STEITZ. MECHANISM OF TRANSFER RNA MATURATION BY CCA-ADDING ENZYME WITHOUT USING AN OLIGONUCLEOTIDE TEMPLATE.. NATURE V. 430 640 2004 ASTM NATUAS UK ISSN 0028-0836 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ARCHAEOGLOBUS FULGIDUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 6.21 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 152 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00569 Number of domains [?]: 2 Number of unpaired bases [?]: 60 Number of paired bases [?]: 92

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 46 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.75 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.9 Average estimated free energy [?]: -9.23 Minimum estimated free energy [?]: -10.6

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 6.67 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 2 Average multi-loop relative asymmetry: 0.42 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AC non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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