RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00733
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00733
Molecule name [?]:HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE
Source [?]:RCSB Protein Data Bank
Source ID [?]:1TFY
Reference [?]:Y.XIONG,T.A.STEITZ. MECHANISM OF TRANSFER RNA MATURATION BY CCA-ADDING ENZYME WITHOUT USING AN OLIGONUCLEOTIDE TEMPLATE.. NATURE V. 430 640 2004 ASTM NATUAS UK ISSN 0028-0836
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ARCHAEOGLOBUS FULGIDUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.20 ANGSTROMS; ran through RNAview
Number of molecules [?]:7
Length [?]:77
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:3
Number of unpaired bases [?]:17
Number of paired bases [?]:60

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:30
Maximum length of a stem [?]:11
Average length of a stem [?]:10
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-15
Average estimated free energy [?]:-20.4
Minimum estimated free energy [?]:-23.1

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:2.33
Minimum number of free bases in hairpin loop [?]:1

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AC non-canonical base pairs:1

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia