RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00745
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00745
Molecule name [?]:THE SOLUTION STRUCTURE OF A SUBSTRATE OF ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1U3K
Reference [?]:E.C.POLLOCK,P.B.MOORE. THE SOLUTION STRUCTURE OF A SUBSTRATE OF ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES. TO BE PUBLISHED
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:38
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00006, PDB_00240
Number of domains [?]:1
Number of unpaired bases [?]:8
Number of paired bases [?]:30

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:15
Maximum length of a stem [?]:6
Average length of a stem [?]:5
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-7.8
Average estimated free energy [?]:-9.67
Minimum estimated free energy [?]:-13.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:1.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AG non-canonical base pairs:1

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia