RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00891
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00891
Molecule name [?]:	CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1ZE2
Reference [?]:	K.PHANNACHET,R.H.HUANG. CONFORMATIONAL CHANGE OF PSEUDOURIDINE 55 SYNTHASE UPON ITS ASSOCIATION WITH RNA SUBSTRATE. NUCLEIC ACIDS RES. V. 32 1422 2004 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	THERMOTOGA MARITIMA
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 3.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	44
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	14
Number of paired bases [?]:	30

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	15
Maximum length of a stem [?]:	8
Average length of a stem [?]:	7.5
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-16.7
Average estimated free energy [?]:	-16.7
Minimum estimated free energy [?]:	-16.7

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of GG non-canonical base pairs:	1

Pseudoknot features