RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00901
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00901
Molecule name [?]:GLUTAMINYL-TRNA SYNTHETASE COMPLEXED TO GLUTAMINE AND 2'DEOXY A76 GLUTAMINE TRNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:1ZJW
Reference [?]:I.GRUIC-SOVULJ,N.UTER,T.BULLOCK,J.J.PERONA. TRNA-DEPENDENT AMINOACYL-ADENYLATE HYDROLYSIS BY A NONEDITING CLASS I AMINOACYL-TRNA SYNTHETASE.. J.BIOL.CHEM. V. 280 23978 2005 ASTM JBCHA3 US ISSN 0021-9258
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:74
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00425, PDB_00426, PDB_00620, PDB_00621, PDB_00669, PDB_00670, PDB_00671, PDB_00672, PDB_01258, PDB_01259
Number of domains [?]:1
Number of unpaired bases [?]:30
Number of paired bases [?]:44

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:22
Maximum length of a stem [?]:7
Average length of a stem [?]:5.5
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-6.7
Average estimated free energy [?]:-10.42
Minimum estimated free energy [?]:-13.4

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:5.67
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:2.67
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:1.18
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AA non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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