RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00902
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00902
Molecule name [?]:	COUPLING OF ACTIVE SITE MOTIONS AND RNA BINDING
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1ZL3
Reference [?]:	C.HOANG,C.S.HAMILTON,E.G.MUELLER,A.R.FERRE-D'AMARE. PRECURSOR COMPLEX STRUCTURE OF PSEUDOURIDINE SYNTHASE TRUB SUGGESTS COUPLING OF ACTIVE SITE PERTURBATIONS TO AN RNA-SEQUESTERING PERIPHERAL PROTEIN DOMAIN. PROTEIN SCI. V. 14 2201 2005 ASTM PRCIEI US ISSN 0961-8368
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:	1
Length [?]:	22
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00513
Number of domains [?]:	1
Number of unpaired bases [?]:	8
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-14.3
Average estimated free energy [?]:	-14.3
Minimum estimated free energy [?]:	-14.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features