RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule PDB_00916
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00916
Molecule name [?]:CRYSTAL STRUCTURE OF RNA OLIGOMER CONTAINING 4'-THIORIBOSE
Source [?]:RCSB Protein Data Bank
Source ID [?]:2A0P
Reference [?]:P.HAEBERLI,I.BERGER,P.S.PALLAN,M.EGLI. SYNTHESES OF 4'-THIORIBONUCLEOSIDES AND THERMODYNAMIC STABILITY AND CRYSTAL STRUCTURE OF RNA OLIGOMERS WITH INCORPORATED 4'-THIOCYTOSINE. NUCLEIC ACIDS RES. V. 33 3965 2005 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.95 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:16
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00001, PDB_00212, PDB_00235
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-22.2
Average estimated free energy [?]:-22.2
Minimum estimated free energy [?]:-22.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia