RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00923
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00923
Molecule name [?]:	DISSECTING THE ROLES OF A STRICTLY CONSERVED TYROSINE IN SUBSTRATE RECOGNITION AND CATALYSIS BY PSEU
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2AB4
Reference [?]:	K.PHANNACHET,Y.ELIAS,R.H.HUANG. DISSECTING THE ROLES OF A STRICTLY CONSERVED TYROSINE IN SUBSTRATE RECOGNITION AND CATALYSIS BY PSEUDOURIDINE 55 SYNTHASE.. BIOCHEMISTRY V. 44 15488 2005 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	THERMOTOGA MARITIMA
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.40 ANGSTROMS; ran through RNAview
Number of molecules [?]:	1
Length [?]:	20
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	8
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-13.3
Average estimated free energy [?]:	-13.3
Minimum estimated free energy [?]:	-13.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features