RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00939 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00939 Molecule name [?]: CHARGED AND UNCHARGED TRNAS ADOPT DISTINCT CONFORMATIONS WHEN COMPLEXED WITH HUMAN TRYPTOPHANYL-TRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2AZX Reference [?]: X.L.YANG,F.J.OTERO,K.L.EWALT,J.LIU,M.A.SWAIRJO, C.KOHRER,U.L.RAJBHANDARY,R.J.SKENE,D.E.MCREE, P.SCHIMMEL. TWO CONFORMATIONS OF A CRYSTALLINE HUMAN TRNA SYNTHETASE-TRNA COMPLEX: IMPLICATIONS FOR PROTEIN SYNTHESIS.. EMBO J. V. 25 2919 2006 ASTM EMJODG UK ISSN 0261-4189 Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 144 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 54 Number of paired bases [?]: 90

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 45 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.62 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -9 Average estimated free energy [?]: -9.75 Minimum estimated free energy [?]: -13.9

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.33 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 2 Average multi-loop relative asymmetry: 0.42 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 5 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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