RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00943
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00943
Molecule name [
?
]:
CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE, TADA, IN COMPLEX WITH RNA
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
2B3J
Reference [
?
]:
H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE. CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE TADA IN COMPLEX WITH RNA.. NAT.STRUCT.MOL.BIOL. V. 13 153 2006 US ISSN 1545-9993
Type [
?
]:
Transfer RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
STAPHYLOCOCCUS AUREUS SUBSP
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.00 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
4
Length [
?
]:
54
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
3
Number of unpaired bases [
?
]:
24
Number of paired bases [
?
]:
30
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
3
Number of base pairs in stems [
?
]:
15
Maximum length of a stem [
?
]:
5
Average length of a stem [
?
]:
5
Minimum length of a stem [
?
]:
5
Maximum estimated free energy [
?
]:
-5.4
Average estimated free energy [
?
]:
-5.4
Minimum estimated free energy [
?
]:
-5.4
Hairpin loop features
Number of hairpin loops [
?
]:
3
Maximum number of free bases in hairpin loops [
?
]:
5
Average number of free bases in hairpin loops [
?
]:
5
Minimum number of free bases in hairpin loop [
?
]:
5
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
3
Total number of AC non-canonical base pairs:
3
Pseudoknot features
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