RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00943
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Format:
Molecule ID [?]:PDB_00943
Molecule name [?]:CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE, TADA, IN COMPLEX WITH RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:2B3J
Reference [?]:H.C.LOSEY,A.J.RUTHENBURG,G.L.VERDINE. CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS TRNA ADENOSINE DEAMINASE TADA IN COMPLEX WITH RNA.. NAT.STRUCT.MOL.BIOL. V. 13 153 2006 US ISSN 1545-9993
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:STAPHYLOCOCCUS AUREUS SUBSP
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:4
Length [?]:54
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:3
Number of unpaired bases [?]:24
Number of paired bases [?]:30

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:15
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-5.4
Average estimated free energy [?]:-5.4
Minimum estimated free energy [?]:-5.4

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:5
Average number of free bases in hairpin loops [?]:5
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 3
Total number of AC non-canonical base pairs:3

Pseudoknot features



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