RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00978
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00978
Molecule name [?]:	REFINEMENT OF RNASE P P4 STEMLOOP STRUCTURE USING RESIDUAL DIPOLAR COUPLING DATA, C70U MUTANT COBALT
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2CD6
Reference [?]:	M.SCHMITZ. REFINEMENT OF RNASE P RNA P4 STEMLOOP STRUCTURE BY RESIDUAL DIPOLAR COUPLING DATA. TO BE PUBLISHED
Type [?]:	Other RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	27
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00058, PDB_00060, PDB_00062, PDB_00064, PDB_00976
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-11.2
Average estimated free energy [?]:	-11.8
Minimum estimated free energy [?]:	-12.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features