RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00980
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00980
Molecule name [?]:CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET)
Source [?]:RCSB Protein Data Bank
Source ID [?]:2CSX
Reference [?]:K.NAKANISHI,Y.OGISO,T.NAKAMA,S.FUKAI,O.NUREKI. CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS METHIONYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(MET). TO BE PUBLISHED
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:AQUIFEX AEOLICUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:150
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:68
Number of paired bases [?]:82

Click on any header below for additional features.

Stem features

Number of stems [?]:9
Number of base pairs in stems [?]:41
Maximum length of a stem [?]:7
Average length of a stem [?]:4.56
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-3.3
Average estimated free energy [?]:-9.93
Minimum estimated free energy [?]:-18.2

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:9
Average number of free bases in hairpin loops [?]:7.67
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:1
Average number of free bases in internal loops:1
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:2.67
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:1.18
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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