RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00983 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00983 Molecule name [?]: GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU), ATP, AND AN ANALOG OF Source [?]: RCSB Protein Data Bank Source ID [?]: 2CV1 Reference [?]: S.SEKINE,S.YOKOYAMA. GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU), ATP, AND AN ANALOG OF L-GLUTAMATE: A QUATERNARY COMPLEX. TO BE PUBLISHED Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: THERMUS THERMOPHILUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.41 ANGSTROMS; ran through RNAview Number of molecules [?]: 3 Length [?]: 152 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00593, PDB_00594, PDB_00984, PDB_01014 Number of domains [?]: 2 Number of unpaired bases [?]: 62 Number of paired bases [?]: 90

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 45 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.62 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -6.7 Average estimated free energy [?]: -11.66 Minimum estimated free energy [?]: -16

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 8 Average number of free bases in hairpin loops [?]: 6.67 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 4 Average number of free bases in multi-loops: 1.5 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 4 Average multi-loop relative asymmetry: 0.69 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 4 Total number of AC non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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