RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00994
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00994
Molecule name [?]:CRYSTAL STRUCTURE OF GLU-TRNA(GLN) AMIDOTRANSFERASE IN THE COMPLEX WITH TRNA(GLN)
Source [?]:RCSB Protein Data Bank
Source ID [?]:2D6F
Reference [?]:H.OSHIKANE,K.SHEPPARD,S.FUKAI,Y.NAKAMURA, R.ISHITANI,T.NUMATA,R.L.SHERRER,L.FENG,E.SCHMITT, M.PANVERT,S.BLANQUET,Y.MECHULAM,D.SOLL,O.NUREKI. STRUCTURAL BASIS OF RNA-DEPENDENT RECRUITMENT OF GLUTAMINE TO THE GENETIC CODE. SCIENCE V. 312 1950 2006 ASTM SCIEAS US ISSN 0036-8075
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:METHANOBACTERIUM THERMOFORMICICUM
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.15 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:146
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:62
Number of paired bases [?]:84

Click on any header below for additional features.

Stem features

Number of stems [?]:8
Number of base pairs in stems [?]:42
Maximum length of a stem [?]:7
Average length of a stem [?]:5.25
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.1
Average estimated free energy [?]:-10.61
Minimum estimated free energy [?]:-15.7

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:12
Average number of free bases in hairpin loops [?]:7.67
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:4
Average multi-loop relative asymmetry:0.69
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AC non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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