RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01000
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_01000
Molecule name [?]:COCRYSTAL STRUCTURE OF AN RNA SULFURATION ENZYME MNMA AND TRNA-GLU IN THE ADENYLATED INTERMEDIATE ST
Source [?]:RCSB Protein Data Bank
Source ID [?]:2DEU
Reference [?]:T.NUMATA,Y.IKEUCHI,S.FUKAI,T.SUZUKI,O.NUREKI. SNAPSHOTS OF TRNA SULPHURATION VIA AN ADENYLATED INTERMEDIATE. NATURE V. 442 419 2006 ASTM NATUAS UK ISSN 0028-0836
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 3.40 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:148
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:6
Number of unpaired bases [?]:88
Number of paired bases [?]:60

Click on any header below for additional features.

Stem features

Number of stems [?]:6
Number of base pairs in stems [?]:30
Maximum length of a stem [?]:7
Average length of a stem [?]:5
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-6.6
Average estimated free energy [?]:-9.3
Minimum estimated free energy [?]:-14.6

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:6.33
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of AA non-canonical base pairs:2
Total number of CC non-canonical base pairs:2

Pseudoknot features



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