RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01006
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_01006
Molecule name [?]:COMPLEX STRUCTURE OF CCA-ADDING ENZYME WITH TRNAMINIDCC
Source [?]:RCSB Protein Data Bank
Source ID [?]:2DR9
Reference [?]:K.TOMITA,R.ISHITANI,S.FUKAI,O.NUREKI. COMPLETE CRYSTALLOGRAPHIC ANALYSIS OF THE DYNAMICS OF CCA SEQUENCE ADDITION. NATURE V. 443 956 2006 ASTM NATUAS UK ISSN 1476-4687
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:ARCHAEOGLOBUS FULGIDUS
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:34
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_01007, PDB_01013
Number of domains [?]:1
Number of unpaired bases [?]:10
Number of paired bases [?]:24

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:12
Maximum length of a stem [?]:12
Average length of a stem [?]:12
Minimum length of a stem [?]:12
Maximum estimated free energy [?]:-32.5
Average estimated free energy [?]:-32.5
Minimum estimated free energy [?]:-32.5

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:7
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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