RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01058
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Format:
Molecule ID [?]:PDB_01058
Molecule name [?]:SOLUTION STRUCTURE OF THE ANTICODON LOOP OF S. POMBE TRNAI INCLUDING THE NATURALLY OCCURRING N6-THRE
Source [?]:RCSB Protein Data Bank
Source ID [?]:2G1G
Reference [?]:E.LESCRINIER,K.NAUWELAERTS,K.ZANIER,K.POESEN, M.SATTLER,P.HERDEWIJN. THE NATURALLY OCCURRING N6-THREONYL ADENINE IN ANTICODON LOOP OF SCHIZOSACCHAROMYCES POMBE TRNAI CAUSES FORMATION OF A UNIQUE U-TURN MOTIF. NUCLEIC ACIDS RES. V. 34 2878 2006 ASTM NARHAD UK ISSN 0305-1048
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:17
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:14

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:7
Maximum length of a stem [?]:7
Average length of a stem [?]:7
Minimum length of a stem [?]:7
Maximum estimated free energy [?]:-11.2
Average estimated free energy [?]:-11.2
Minimum estimated free energy [?]:-11.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:3
Average number of free bases in hairpin loops [?]:3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AC non-canonical base pairs:1

Pseudoknot features



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