RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01074
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01074
Molecule name [?]:	RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2GJW
Reference [?]:	S.XUE,K.CALVIN,H.LI. RNA RECOGNITION AND CLEAVAGE BY AN SPLICING ENDONUCLEASE. SCIENCE V. 312 902 2006 ASTM SCIEAS US ISSN 0036-8075
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	ARCHAEOGLOBUS FULGIDUS
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.85 ANGSTROMS; ran through RNAview
Number of molecules [?]:	6
Length [?]:	75
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	25
Number of paired bases [?]:	50

Click on any header below for additional features.

Stem features

Number of stems [?]:	6
Number of base pairs in stems [?]:	25
Maximum length of a stem [?]:	6
Average length of a stem [?]:	4.17
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-3.4
Average estimated free energy [?]:	-8.47
Minimum estimated free energy [?]:	-13.7

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	8
Average number of free bases in hairpin loops [?]:	5.5
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	4
Maximum number of free bases in bulge loops [?]:	3
Average number of free bases in bulge loops [?]:	1.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features