RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01084
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01084
Molecule name [?]:	TRANSLOCATION OF A TRNA WITH AN EXTENDED ANTICODON THROUGH THE RIBOSOME
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2GV3
Reference [?]:	S.S.PHELPS,C.GAUDIN,S.YOSHIZAWA,C.BENITEZ,D.FOURMY, S.JOSEPH. TRANSLOCATION OF A TRNA WITH AN EXTENDED ANTICODON THROUGH THE RIBOSOME.. J.MOL.BIOL. V. 360 610 2006 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	22
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	8
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-16.6
Average estimated free energy [?]:	-16.6
Minimum estimated free energy [?]:	-16.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	8
Average number of free bases in hairpin loops [?]:	8
Minimum number of free bases in hairpin loop [?]:	8

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features