RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01126 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01126 Molecule name [?]: CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED Source [?]: RCSB Protein Data Bank Source ID [?]: 2I82 Reference [?]: C.HOANG,J.CHEN,C.A.VIZTHUM,J.M.KANDEL,C.S.HAMILTON, E.G.MUELLER,A.R.FERRE-D'AMARE. CRYSTAL STRUCTURE OF PSEUDOURIDINE SYNTHASE RLUA: INDIRECT SEQUENCE READOUT THROUGH PROTEIN-INDUCED RNA STRUCTURE. MOL.CELL V. 24 535 2006 ASTM MOCEFL US ISSN 1097-2765 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.05 ANGSTROMS; ran through RNAview Number of molecules [?]: 4 Length [?]: 79 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 4 Number of unpaired bases [?]: 23 Number of paired bases [?]: 56

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 28 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -16.8 Average estimated free energy [?]: -16.8 Minimum estimated free energy [?]: -16.8

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 5.75 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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