RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01147
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Format:
Molecule ID [?]:PDB_01147
Molecule name [?]:NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH NO MODIFICATIONS
Source [?]:RCSB Protein Data Bank
Source ID [?]:2JR4
Reference [?]:F.A.P.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM, B.SPROAT,A.MALKIEWICZ,P.F.AGRIS. WOBBLE-POSITION MODIFICATIONS PRE-STRUCTURE TRNA'S ANTICODON FOR RIBOSOME-MEDIATED CODON BINDING. TO BE PUBLISHED
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:17
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_01148, PDB_01149, PDB_01151
Number of domains [?]:1
Number of unpaired bases [?]:5
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-11.1
Average estimated free energy [?]:-11.1
Minimum estimated free energy [?]:-11.1

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:5
Average number of free bases in hairpin loops [?]:5
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of AC non-canonical base pairs:1

Pseudoknot features



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