RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_01147
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_01147
Molecule name [
?
]:
NMR SOLUTION STRUCTURE OF THE ANTICODON OF E.COLI TRNA-VAL3 WITH NO MODIFICATIONS
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
2JR4
Reference [
?
]:
F.A.P.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM, B.SPROAT,A.MALKIEWICZ,P.F.AGRIS. WOBBLE-POSITION MODIFICATIONS PRE-STRUCTURE TRNA'S ANTICODON FOR RIBOSOME-MEDIATED CODON BINDING. TO BE PUBLISHED
Type [
?
]:
Transfer RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
17
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_01148
,
PDB_01149
,
PDB_01151
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
5
Number of paired bases [
?
]:
12
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
6
Maximum length of a stem [
?
]:
6
Average length of a stem [
?
]:
6
Minimum length of a stem [
?
]:
6
Maximum estimated free energy [
?
]:
-11.1
Average estimated free energy [
?
]:
-11.1
Minimum estimated free energy [
?
]:
-11.1
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
5
Average number of free bases in hairpin loops [
?
]:
5
Minimum number of free bases in hairpin loop [
?
]:
5
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
1
Total number of AC non-canonical base pairs:
1
Pseudoknot features
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