RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01162
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01162
Molecule name [?]:	CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2NRE
Reference [?]:	S.HUR,R.M.STROUD. HOW U38, 39, AND 40 OF MANY TRNAS BECOME THE TARGETS FOR PSEUDOURIDYLATION BY TRUA.. MOL.CELL V. 26 189 2007 ASTM MOCEFL US ISSN 1097-2765
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	ESCHERICHIA COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 4.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:	1
Length [?]:	56
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	38
Number of paired bases [?]:	18

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	9
Maximum length of a stem [?]:	5
Average length of a stem [?]:	4.5
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-6.8
Average estimated free energy [?]:	-9
Minimum estimated free energy [?]:	-11.2

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	3.5
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features