RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01202 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01202 Molecule name [?]: SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA Source [?]: RCSB Protein Data Bank Source ID [?]: 2PCV Reference [?]: H.JIN,J.P.LORIA,P.B.MOORE. SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA. MOL.CELL V. 26 205 2007 ASTM MOCEFL US ISSN 1097-2765 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 35 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 17 Number of paired bases [?]: 18

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -7.6 Average estimated free energy [?]: -9.4 Minimum estimated free energy [?]: -11.2

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 7 Average number of free bases in internal loops: 6.5 Minimum number of free bases in internal loop: 6 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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