RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_01204
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Format:
Molecule ID [?]:PDB_01204
Molecule name [?]:STRUCTURE OF THE MRNA-BINDING DOMAIN OF ELONGATION FACTOR SELB FROM E.COLI IN COMPLEX WITH SECIS RNA
Source [?]:RCSB Protein Data Bank
Source ID [?]:2PJP
Reference [?]:N.SOLER,D.FOURMY,S.YOSHIZAWA. STRUCTURAL INSIGHT INTO A MOLECULAR SWITCH IN TANDEM WINGED-HELIX MOTIFS FROM ELONGATION FACTOR SELB.. J.MOL.BIOL. V. 370 728 2007 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:1
Length [?]:23
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00153
Number of domains [?]:1
Number of unpaired bases [?]:3
Number of paired bases [?]:20

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:10
Maximum length of a stem [?]:5
Average length of a stem [?]:5
Minimum length of a stem [?]:5
Maximum estimated free energy [?]:-9.7
Average estimated free energy [?]:-11.05
Minimum estimated free energy [?]:-12.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:2
Average number of free bases in hairpin loops [?]:2
Minimum number of free bases in hairpin loop [?]:2

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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