RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_01204
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_01204
Molecule name [
?
]:
STRUCTURE OF THE MRNA-BINDING DOMAIN OF ELONGATION FACTOR SELB FROM E.COLI IN COMPLEX WITH SECIS RNA
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
2PJP
Reference [
?
]:
N.SOLER,D.FOURMY,S.YOSHIZAWA. STRUCTURAL INSIGHT INTO A MOLECULAR SWITCH IN TANDEM WINGED-HELIX MOTIFS FROM ELONGATION FACTOR SELB.. J.MOL.BIOL. V. 370 728 2007 ASTM JMOBAK UK ISSN 0022-2836
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
23
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00153
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
3
Number of paired bases [
?
]:
20
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
2
Number of base pairs in stems [
?
]:
10
Maximum length of a stem [
?
]:
5
Average length of a stem [
?
]:
5
Minimum length of a stem [
?
]:
5
Maximum estimated free energy [
?
]:
-9.7
Average estimated free energy [
?
]:
-11.05
Minimum estimated free energy [
?
]:
-12.4
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
1
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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