RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01280 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01280 Molecule name [?]: TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 ANGS Source [?]: RCSB Protein Data Bank Source ID [?]: 2V6W Reference [?]: C.FOERSTER,A.B.E.BRAUER,S.BRODE,J.P.FUERSTE, C.BETZEL,V.A.ERDMANN. TRNASER ACCEPTOR STEM: CONFORMATION AND HYDRATION OF A MICROHELIX IN A CRYSTAL STRUCTURE AT 1.8 A RESOLUTION. ACTA CRYSTALLOGR.,SECT.D V. 63 1154 2007 ASTM ABCRE6 DK ISSN 0907-4449 TO BE PUBLISHED Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.8 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 14 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 14

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 7 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -14.7 Average estimated free energy [?]: -14.7 Minimum estimated free energy [?]: -14.7

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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