RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule RFA_00590 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: RFA_00590 Molecule name [?]: Y RNA, RF00019, L41730.1/373-476 Source [?]: Rfam Database Source ID [?]: RF00019 L41730.1/476-373 Reference [?]: Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124. Type [?]: Y RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 104 Fragments used [?]: N/A Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 74 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 8 Average length of a stem [?]: 7.5 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -10.3 Average estimated free energy [?]: -10.45 Minimum estimated free energy [?]: -10.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 65 Average number of free bases in hairpin loops [?]: 65 Minimum number of free bases in hairpin loop [?]: 65

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 5 Average number of free bases in internal loops: 3.5 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 3 Minimum internal loop absolute asymmetry: 3 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of CU non-canonical base pairs: 2

Pseudoknot features

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