RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule RFA_00592
(click to expand/contract all tables)

Format:
Molecule ID [?]:RFA_00592
Molecule name [?]:Y RNA, RF00019, U34828.1/1-110
Source [?]:Rfam Database
Source ID [?]:RF00019 U34828.1/110-1
Reference [?]:Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124.
Type [?]:Y RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:110
Fragments used [?]:N/A
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:80
Number of paired bases [?]:30

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:15
Maximum length of a stem [?]:8
Average length of a stem [?]:7.5
Minimum length of a stem [?]:7
Maximum estimated free energy [?]:-12.3
Average estimated free energy [?]:-13.05
Minimum estimated free energy [?]:-13.8

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:66
Average number of free bases in hairpin loops [?]:66
Minimum number of free bases in hairpin loop [?]:66

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:7
Average number of free bases in internal loops:6
Minimum number of free bases in internal loop:5
Maximum internal loop absolute asymmetry:2
Average internal loop absolute asymmetry:2
Minimum internal loop absolute asymmetry:2
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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