RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule RFA_00606
(click to expand/contract all tables)

Format:
Molecule ID [?]:RFA_00606
Molecule name [?]:Ciliate telomerase RNA, RF00025, M33461.1/140-346
Source [?]:Rfam Database
Source ID [?]:RF00025 M33461.1/346-140
Reference [?]:Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124.
Type [?]:Ciliate Telomerase RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:207
Fragments used [?]:N/A
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:129
Number of paired bases [?]:78

Click on any header below for additional features.

Stem features

Number of stems [?]:8
Number of base pairs in stems [?]:39
Maximum length of a stem [?]:8
Average length of a stem [?]:4.88
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-2.1
Average estimated free energy [?]:-6.01
Minimum estimated free energy [?]:-9.9

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:9
Average number of free bases in hairpin loops [?]:7.67
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:10
Average number of free bases in bulge loops [?]:3.25
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:10
Average number of free bases in internal loops:3.75
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:7
Average internal loop absolute asymmetry:3.5
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:2
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:41
Average number of free bases in multi-loops:18
Minimum number of free bases in multi-loop:5
Maximum multi-loop absolute asymmetry:36
Average multi-loop absolute asymmetry:24
Minimum multi-loop absolute asymmetry:3
Maximum multi-loop relative asymmetry:8.2
Average multi-loop relative asymmetry:2.64
Minimum multi-loop relative asymmetry:0.12
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of AA non-canonical base pairs:1
Total number of CU non-canonical base pairs:2
Total number of UU non-canonical base pairs:1

Pseudoknot features



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