RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule RFA_00639
(click to expand/contract all tables)

Format:
Molecule ID [?]:RFA_00639
Molecule name [?]:7SK RNA, RF00100, X04992.1/244-574
Source [?]:Rfam Database
Source ID [?]:RF00100 X04992.1/574-244
Reference [?]:Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124.
Type [?]:7SK RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:331
Fragments used [?]:N/A
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:4
Number of unpaired bases [?]:157
Number of paired bases [?]:174

Click on any header below for additional features.

Stem features

Number of stems [?]:23
Number of base pairs in stems [?]:87
Maximum length of a stem [?]:10
Average length of a stem [?]:3.78
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-1.5
Average estimated free energy [?]:-6.6
Minimum estimated free energy [?]:-17.1

Hairpin loop features

Number of hairpin loops [?]:5
Maximum number of free bases in hairpin loops [?]:13
Average number of free bases in hairpin loops [?]:8
Minimum number of free bases in hairpin loop [?]:5

Bulge loop features
Number of bulge loops [?]:6
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:0.75
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:11
Maximum number of free bases in internal loops:6
Average number of free bases in internal loops:2.18
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:3
Average internal loop absolute asymmetry:1.64
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:4
Average internal loop relative asymmetry:2.45
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:2
Average number of free bases in multi-loops:0.67
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:2
Average multi-loop absolute asymmetry:1.33
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:0
Average multi-loop relative asymmetry:0
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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