RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule SPR_00079
(click to expand/contract all tables)

Format:
Molecule ID [?]:SPR_00079
Molecule name [?]:Sprinzl tRNA RF5280
Source [?]:Sprinzl tRNA Database
Source ID [?]:RF5280
Reference [?]:M. Sprinzl and K.S. Vassilenko, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Research, 2005, Vol. 33, D139-D140.
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:71
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:33
Number of paired bases [?]:38

Click on any header below for additional features.

Stem features

Number of stems [?]:5
Number of base pairs in stems [?]:19
Maximum length of a stem [?]:5
Average length of a stem [?]:3.8
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-3.1
Average estimated free energy [?]:-5.6
Minimum estimated free energy [?]:-8.5

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:6.33
Minimum number of free bases in hairpin loop [?]:6

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:1
Average number of free bases in internal loops:1
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.75
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.17
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:4
Average multi-loop relative asymmetry:1.03
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia