RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule SPR_00102
(click to expand/contract all tables)

Format:
Molecule ID [?]:SPR_00102
Molecule name [?]:Sprinzl tRNA RF9990
Source [?]:Sprinzl tRNA Database
Source ID [?]:RF9990
Reference [?]:M. Sprinzl and K.S. Vassilenko, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Research, 2005, Vol. 33, D139-D140.
Type [?]:Transfer RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:76
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: SPR_00092, SPR_00096, SPR_00098, SPR_00101
Number of domains [?]:1
Number of unpaired bases [?]:34
Number of paired bases [?]:42

Click on any header below for additional features.

Stem features

Number of stems [?]:4
Number of base pairs in stems [?]:21
Maximum length of a stem [?]:7
Average length of a stem [?]:5.25
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-4.5
Average estimated free energy [?]:-8.2
Minimum estimated free energy [?]:-13.3

Hairpin loop features

Number of hairpin loops [?]:3
Maximum number of free bases in hairpin loops [?]:8
Average number of free bases in hairpin loops [?]:7.33
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:2
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:2.67
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:1.18
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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