RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SRP_00029 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SRP_00029 Molecule name [?]: BAC.LI-B Source [?]: SRP Database Source ID [?]: BAC.LI-B Reference [?]: Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 31, Database Issue, 363-364 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 271 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: SRP_00028 Number of domains [?]: 1 Number of unpaired bases [?]: 99 Number of paired bases [?]: 172

Click on any header below for additional features.

Stem features Number of stems [?]: 24 Number of base pairs in stems [?]: 86 Maximum length of a stem [?]: 8 Average length of a stem [?]: 3.58 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -5.65 Minimum estimated free energy [?]: -16.9

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 11 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 7 Maximum number of free bases in bulge loops [?]: 3 Average number of free bases in bulge loops [?]: 0.79 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 12 Maximum number of free bases in internal loops: 6 Average number of free bases in internal loops: 2.29 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 3 Average internal loop absolute asymmetry: 0.75 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 1.42 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 6 Average number of free bases in multi-loops: 2.33 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 5 Average multi-loop absolute asymmetry: 3 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 6 Average multi-loop relative asymmetry: 1 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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