RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SRP_00076 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SRP_00076 Molecule name [?]: CHL.PN-A Source [?]: SRP Database Source ID [?]: CHL.PN-A Reference [?]: Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 31, Database Issue, 363-364 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 226 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 148 Number of paired bases [?]: 78

Click on any header below for additional features.

Stem features Number of stems [?]: 11 Number of base pairs in stems [?]: 39 Maximum length of a stem [?]: 14 Average length of a stem [?]: 3.55 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -4.45 Minimum estimated free energy [?]: -23.7

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 32 Average number of free bases in hairpin loops [?]: 18 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.75 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 7 Maximum number of free bases in internal loops: 5 Average number of free bases in internal loops: 2.64 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 5 Average internal loop relative asymmetry: 1.57 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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