RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SRP_00155 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SRP_00155 Molecule name [?]: HUM.LU-C Source [?]: SRP Database Source ID [?]: HUM.LU-C Reference [?]: Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 31, Database Issue, 363-364 Type [?]: Signal Recognition Particle RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 303 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 125 Number of paired bases [?]: 178

Click on any header below for additional features.

Stem features Number of stems [?]: 31 Number of base pairs in stems [?]: 89 Maximum length of a stem [?]: 9 Average length of a stem [?]: 2.87 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0.3 Average estimated free energy [?]: -3.93 Minimum estimated free energy [?]: -17.2

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 3.6 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 7 Maximum number of free bases in bulge loops [?]: 4 Average number of free bases in bulge loops [?]: 0.79 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 18 Maximum number of free bases in internal loops: 6 Average number of free bases in internal loops: 2.22 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 5 Average internal loop absolute asymmetry: 0.67 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 6 Average internal loop relative asymmetry: 1.5 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 2 Average number of free bases in multi-loops: 1.75 Minimum number of free bases in multi-loop: 1 Maximum multi-loop absolute asymmetry: 1 Average multi-loop absolute asymmetry: 0.5 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 2 Average multi-loop relative asymmetry: 1.12 Minimum multi-loop relative asymmetry: 0.5 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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