RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule TMR_00011
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
TMR_00011
Molecule name [
?
]:
Acin.baum._TRW-470_1-331
Source [
?
]:
tmRNA Database
Source ID [
?
]:
Acin.baum._TRW-470_1-331
Reference [
?
]:
Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database) Nucleic Acids Res, 31, 446-447.
Type [
?
]:
Transfer Messenger RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
No
Method for secondary structure determination [
?
]:
Comparative sequence analysis
Number of molecules [
?
]:
1
Length [
?
]:
331
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
321
Number of paired bases [
?
]:
10
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
5
Maximum length of a stem [
?
]:
5
Average length of a stem [
?
]:
5
Minimum length of a stem [
?
]:
5
Maximum estimated free energy [
?
]:
-12.4
Average estimated free energy [
?
]:
-12.4
Minimum estimated free energy [
?
]:
-12.4
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
7
Average number of free bases in hairpin loops [
?
]:
7
Minimum number of free bases in hairpin loop [
?
]:
7
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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