RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule TMR_00149
(click to expand/contract all tables)

Format:
Molecule ID [?]:TMR_00149
Molecule name [?]:Cyan.mero._TRW-45157_1-236
Source [?]:tmRNA Database
Source ID [?]:Cyan.mero._TRW-45157_1-236
Reference [?]:Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database) Nucleic Acids Res, 31, 446-447.
Type [?]:Transfer Messenger RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:236
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: TMR_00148
Number of domains [?]:1
Number of unpaired bases [?]:202
Number of paired bases [?]:34

Click on any header below for additional features.

Stem features

Number of stems [?]:5
Number of base pairs in stems [?]:17
Maximum length of a stem [?]:7
Average length of a stem [?]:3.4
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-5.72
Minimum estimated free energy [?]:-14.5

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:7
Minimum number of free bases in hairpin loop [?]:7

Bulge loop features
Number of bulge loops [?]:1
Maximum number of free bases in bulge loops [?]:167
Average number of free bases in bulge loops [?]:83.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:1
Average number of free bases in internal loops:1
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:12
Average number of free bases in multi-loops:5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:12
Average multi-loop absolute asymmetry:8
Minimum multi-loop absolute asymmetry:3
Maximum multi-loop relative asymmetry:4
Average multi-loop relative asymmetry:1.06
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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