RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Cis-regulatory element Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 41 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00640 Vimentin 3 prime UTR protein-binding region, RF00109, AB169770.1/1641-1705 Cis-reg. element Unknown Rfam Database RF00109 AB169770.1/1705-1641 65 RFA_00641 Vimentin 3 prime UTR protein-binding region, RF00109, AB188279.1/1604-1668 Cis-reg. element Unknown Rfam Database RF00109 AB188279.1/1668-1604 65 RFA_00642 Vimentin 3 prime UTR protein-binding region, RF00109, AF447708.1/1750-1826 Cis-reg. element Unknown Rfam Database RF00109 AF447708.1/1826-1750 77 RFA_00643 Vimentin 3 prime UTR protein-binding region, RF00109, AJ493266.1/1523-1589 Cis-reg. element Unknown Rfam Database RF00109 AJ493266.1/1589-1523 67 RFA_00644 Vimentin 3 prime UTR protein-binding region, RF00109, BC045233.1/1484-1557 Cis-reg. element Unknown Rfam Database RF00109 BC045233.1/1557-1484 74 RFA_00645 Vimentin 3 prime UTR protein-binding region, RF00109, BC053115.1/1499-1568 Cis-reg. element Unknown Rfam Database RF00109 BC053115.1/1568-1499 70 RFA_00646 Vimentin 3 prime UTR protein-binding region, RF00109, BC054161.1/1500-1573 Cis-reg. element Unknown Rfam Database RF00109 BC054161.1/1573-1500 74 RFA_00647 Vimentin 3 prime UTR protein-binding region, RF00109, BC054327.1/872-945 Cis-reg. element Unknown Rfam Database RF00109 BC054327.1/945-872 74 RFA_00648 Vimentin 3 prime UTR protein-binding region, RF00109, BC087987.1/1512-1585 Cis-reg. element Unknown Rfam Database RF00109 BC087987.1/1585-1512 74 RFA_00649 Vimentin 3 prime UTR protein-binding region, RF00109, K00927.1/229-294 Cis-reg. element Unknown Rfam Database RF00109 K00927.1/294-229 66

Analyse the 41 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 41 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 41 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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