RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Other Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 53 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00858 SOLUTION STRUCTURE OF THE VS RIBOZYME STEM-LOOP V IN THE PRESENCE OF MGCL2 Other Ribozyme Unknown RCSB Protein Data Bank 1YN1 17 PDB_00859 SOLUTION STRUCTURE OF THE NEUROSPORA VS RIBOZYME STEM-LOOP V IN THE PRESENCE OF MGCL2 WITH MODELING Other Ribozyme Unknown RCSB Protein Data Bank 1YN2 17 PDB_00893 THE CRYSTAL STRUCTURE OF AN ALL-RNA MINIMAL HAIRPIN RIBOZYME WITH MUTANT G8I AT THE CLEAVAGE SITE Other Ribozyme Unknown RCSB Protein Data Bank 1ZFT 61 PDB_00956 CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8MTU) Other Ribozyme Unknown RCSB Protein Data Bank 2BCY 61 PDB_00957 CRYSTAL STRUCTURE OF A MINIMAL, MUTANT ALL-RNA HAIRPIN RIBOZYME (U39C, G8I, 2'DEOXY A-1) Other Ribozyme Unknown RCSB Protein Data Bank 2BCZ 61 PDB_01068 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2GCS 142 PDB_01069 POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2GCV 141 PDB_01092 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2H0S 143 PDB_01093 POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2H0W 141 PDB_01094 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2H0X 142

Analyse the 53 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 53 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 53 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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