RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Other Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 53 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01095 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHAT Other Ribozyme Unknown RCSB Protein Data Bank 2H0Z 142 PDB_01109 POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 2HO6 141 PDB_01110 PRE-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME BOUND TO GLUCOSE-6-PHOSPHAT Other Ribozyme Unknown RCSB Protein Data Bank 2HO7 142 PDB_01166 STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 2NZ4 604 PDB_01185 HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR WITH C75U MUTATION AND BOUND TO MONOVALENT CATION T Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 2OIH 73 PDB_01187 L1 RIBOZYME LIGASE CIRCULAR ADDUCT Other Ribozyme Unknown RCSB Protein Data Bank 2OIU 142 PDB_01190 HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR STRUCTURE, WITH C75U MUTATION, BOUND TO TL+ AND COBALT HEXA Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 2OJ3 73 PDB_01197 CRYSTAL STRUCTURE OF A JUNCTIONLESS ALL-RNA HAIRPIN RIBOZYME AT 2.05 ANGSTROMS RESOLUTION Other Ribozyme Unknown RCSB Protein Data Bank 2OUE 61 PDB_01200 THE NOVEL USE OF A 2',5'-PHOSPHODIESTER LINKAGE AS A REACTION INTERMEDIATE AT THE ACTIVE SITE OF A S Other Ribozyme Unknown RCSB Protein Data Bank 2P7F 61 PDB_01255 HIGH RESOLUTION STRUCTURE OF A SPECIFIC SYNTHETIC FAB BOUND TO P4-P6 RNA RIBOZYME DOMAIN Other Ribozyme MUS MUSCULUS RCSB Protein Data Bank 2R8S 159

Analyse the 53 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 53 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 53 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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