RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00266 RNase P RNA, Pan troglodytes RNase P RNA Unknown RNase P Database Pan troglodytes 320 ASE_00268 RNase P RNA, Yellowstone Pit#126 RNase P RNA Unknown RNase P Database Yellowstone Pit#126 293 ASE_00270 RNase P RNA, Octopus Spring Pink Filaments#101 RNase P RNA Unknown RNase P Database Octopus Spring Pink Filaments#101 381 ASE_00289 RNase P RNA, Pseudanabaena sp., strain PCC 6903 RNase P RNA Unknown RNase P Database Pseudanabaena sp., strain PCC 6903 450 ASE_00290 RNase P RNA, volunteer PurpleX RNase P RNA Unknown RNase P Database volunteer PurpleX 300 ASE_00291 RNase P RNA, Reclinomonas americana, strain ATCC50394 RNase P RNA Unknown RNase P Database Reclinomonas americana, strain ATCC50394 312 ASE_00293 RNase P RNA, Rattus norvegicus RNase P RNA Unknown RNase P Database Rattus norvegicus 257 ASE_00297 RNase P RNA, volunteer Rr327 RNase P RNA Unknown RNase P Database volunteer Rr327 326 ASE_00298 RNase P RNA, volunteer Rr368 RNase P RNA Unknown RNase P Database volunteer Rr368 368 ASE_00299 RNase P RNA, Sulfolobus acidocaldarius, strain P1 RNase P RNA Sulfolobus acidocaldarius RNase P Database Sulfolobus acidocaldarius, strain P1 315

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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