RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00015 RNase P RNA, Azotobacter salinestris, strain 184 RNase P RNA Unknown RNase P Database Azotobacter salinestris, strain 184 294 ASE_00016 RNase P RNA, Arxiozyma telluris, strain NRRL YB-4302 RNase P RNA Unknown RNase P Database Arxiozyma telluris, strain NRRL YB-4302 364 ASE_00017 RNase P RNA, Ascaphus truei RNase P RNA Unknown RNase P Database Ascaphus truei 320 ASE_00019 RNase P RNA, Azotobacter vinlandii, strain CA RNase P RNA Unknown RNase P Database Azotobacter vinlandii, strain CA 294 ASE_00022 RNase P RNA, Bacillus anthracis RNase P RNA Unknown RNase P Database Bacillus anthracis 408 ASE_00023 RNase P RNA, Bacillus brevis, strain ATCC 8185 RNase P RNA Unknown RNase P Database Bacillus brevis, strain ATCC 8185 411 ASE_00024 RNase P RNA, Bordetella bronchiseptica, strain RB50 RNase P RNA Unknown RNase P Database Bordetella bronchiseptica, strain RB50 243 ASE_00025 RNase P RNA, Bufo bufo RNase P RNA Unknown RNase P Database Bufo bufo 397 ASE_00027 RNase P RNA, Bufo calamita RNase P RNA Unknown RNase P Database Bufo calamita 397 ASE_00028 RNase P RNA, Bacillus halodurans, strain C-125 RNase P RNA Unknown RNase P Database Bacillus halodurans, strain C-125 412

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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