RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00444 RNase P RNA, uncharacterized N2 fixer WA1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer WA1 294 ASE_00445 RNase P RNA, uncharacterized N2 fixer WB3 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer WB3 294 ASE_00446 RNase P RNA, uncharacterized N2 fixer WC1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer WC1 294 ASE_00448 RNase P RNA, Xyelella fastidiosa RNase P RNA Unknown RNase P Database Xyelella fastidiosa 359 ASE_00449 RNase P RNA, Xenopus laevis RNase P RNA Xenopus laevis RNase P Database Xenopus laevis 319 ASE_00450 RNase P RNA, Xenopus laevis RNase P RNA Xenopus laevis RNase P Database Xenopus laevis 318 ASE_00452 RNase P RNA, Zygosaccharomyces bailii, strain NRRL Y-2227 RNase P RNA Unknown RNase P Database Zygosaccharomyces bailii, strain NRRL Y-2227 205 ASE_00453 RNase P RNA, Zygosaccharomyces florentinus, strain NRRL Y-1560 RNase P RNA Unknown RNase P Database Zygosaccharomyces florentinus, strain NRRL Y-1560 262 ASE_00454 RNase P RNA, Zygosaccharomyces rouxii, strain NRRL Y-229 RNase P RNA Unknown RNase P Database Zygosaccharomyces rouxii, strain NRRL Y-229 295 CRW_00001 a.I2.m.S.cerevisiae.A.OX1.i1 GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site a.I2.m.S.cerevisiae.A.OX1.i1 2520

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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