RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00029 RNase P RNA, Bacillus megaterium, strain KM RNase P RNA Unknown RNase P Database Bacillus megaterium, strain KM 408 ASE_00030 RNase P RNA, Bordetella pertussis, strain Tomaha I RNase P RNA Unknown RNase P Database Bordetella pertussis, strain Tomaha I 414 ASE_00031 RNase P RNA, Bacillus stearothermophilus, strain 1430R RNase P RNA Bacillus stearothermophilus RNase P Database Bacillus stearothermophilus, strain 1430R 417 ASE_00032 RNase P RNA, Bacillus subtilis, strain 168 RNase P RNA Bacillus subtilis RNase P Database Bacillus subtilis, strain 168 401 ASE_00034 RNase P RNA, Yellowstone Black Hole#145 RNase P RNA Unknown RNase P Database Yellowstone Black Hole#145 293 ASE_00042 RNase P RNA, Corynebacterium diphtheriae RNase P RNA Unknown RNase P Database Corynebacterium diphtheriae 425 ASE_00045 RNase P RNA, Clostridium innocuum, strain ATCC 14501 RNase P RNA Unknown RNase P Database Clostridium innocuum, strain ATCC 14501 308 ASE_00047 RNase P RNA, Chlorobium limicola, strain thiosulfatophilum RNase P RNA Unknown RNase P Database Chlorobium limicola, strain thiosulfatophilum 386 ASE_00048 RNase P RNA, Clavispora lusitaniae, strain CG78-75 RNase P RNA Unknown RNase P Database Clavispora lusitaniae, strain CG78-75 197 ASE_00051 RNase P RNA, Clavispora opuntiae, strain CG28-540 RNase P RNA Unknown RNase P Database Clavispora opuntiae, strain CG28-540 196

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia