RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Non-canonical base pairs features Number of any non-canonical base pairs per molecule, whose nearest neighbours are: any and any , and second nearest neighbours are any and any: Greater than or equal to 1

Search results: 2296 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00196 RNase P RNA, Methanococcus jannaschii, strain JAL-1 RNase P RNA Methanococcus jannaschii RNase P Database Methanococcus jannaschii, strain JAL-1 252 ASE_00197 RNase P RNA, Mycobacterium leprae RNase P RNA Unknown RNase P Database Mycobacterium leprae 423 ASE_00198 RNase P RNA, Micrococcus luteus, strain S66 RNase P RNA Unknown RNase P Database Micrococcus luteus, strain S66 325 ASE_00199 RNase P RNA, Methanococcus marapaludis, strain JJ RNase P RNA Unknown RNase P Database Methanococcus marapaludis, strain JJ 233 ASE_00200 RNase P RNA, Macaca mulatta RNase P RNA Unknown RNase P Database Macaca mulatta 320 ASE_00201 RNase P RNA, Mus musculus RNase P RNA Mus musculus RNase P Database Mus musculus 289 ASE_00202 RNase P RNA, Microlunatus phosphovorus, strain JCM 9379 RNase P RNA Unknown RNase P Database Microlunatus phosphovorus, strain JCM 9379 305 ASE_00203 RNase P RNA, Microlunatus phosphovorus, strain JCM 9380 RNase P RNA Unknown RNase P Database Microlunatus phosphovorus, strain JCM 9380 306 ASE_00206 RNase P RNA, Methanobacterium thermoautotrophicum, strain delta H RNase P RNA Unknown RNase P Database Methanobacterium thermoautotrophicum, strain delta 293 ASE_00207 RNase P RNA, Methanobacterium thermoautotrophicum, strain delta H RNase P RNA Unknown RNase P Database Methanobacterium thermoautotrophicum, strain delta 293

Analyse the 2296 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2296 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2296 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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