RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00152 RNase P RNA, Helicobacter pylori, strain RU-1 RNase P RNA Unknown RNase P Database Helicobacter pylori, strain RU-1 317 ASE_00153 RNase P RNA, Homo sapiens RNase P RNA Homo sapiens RNase P Database Homo sapiens 340 ASE_00154 RNase P RNA, Halorubrum trapanicum, strain NRC 34021 RNase P RNA Unknown RNase P Database Halorubrum trapanicum, strain NRC 34021 362 ASE_00155 RNase P RNA, Haloferax volcanii, strain DS-2 RNase P RNA Unknown RNase P Database Haloferax volcanii, strain DS-2 433 ASE_00156 RNase P RNA, Halobacterium sp., strain NRC-1 RNase P RNA Unknown RNase P Database Halobacterium sp., strain NRC-1 375 ASE_00157 RNase P RNA, Intrasporangium calvum, strain IFO 12989 RNase P RNA Unknown RNase P Database Intrasporangium calvum, strain IFO 12989 289 ASE_00158 RNase P RNA, Klebsiella pneumoniae RNase P RNA Unknown RNase P Database Klebsiella pneumoniae 383 ASE_00162 RNase P RNA, Leclercia adecarboxylata, strain LBV 449 RNase P RNA Unknown RNase P Database Leclercia adecarboxylata, strain LBV 449 301 ASE_00163 RNase P RNA, Leptospirillum ferrooxidans, strain CF12 RNase P RNA Unknown RNase P Database Leptospirillum ferrooxidans, strain CF12 327 ASE_00164 RNase P RNA, Leptospirillum ferrooxidans, strain MK RNase P RNA Unknown RNase P Database Leptospirillum ferrooxidans, strain MK 327

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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