RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00057 RNase P RNA, Chlamydophila pneumoniae, strain AR39 RNase P RNA Unknown RNase P Database Chlamydophila pneumoniae, strain AR39 406 ASE_00058 RNase P RNA, Chlamydophila pneumoniae, strain CWL 029 RNase P RNA Unknown RNase P Database Chlamydophila pneumoniae, strain CWL 029 406 ASE_00059 RNase P RNA, Chlamydophila pneumoniae, strain TWAR 2023 RNase P RNA Unknown RNase P Database Chlamydophila pneumoniae, strain TWAR 2023 336 ASE_00060 RNase P RNA, Chlamydophila psittaci, strain VR-125 RNase P RNA Unknown RNase P Database Chlamydophila psittaci, strain VR-125 332 ASE_00061 RNase P RNA, Chlamydophila psittaci, strain M56 RNase P RNA Unknown RNase P Database Chlamydophila psittaci, strain M56 388 ASE_00062 RNase P RNA, Chlamydophila psittaci, strain R54 RNase P RNA Unknown RNase P Database Chlamydophila psittaci, strain R54 351 ASE_00063 RNase P RNA, Chlamydophila psittaci, strain 5BS RNase P RNA Unknown RNase P Database Chlamydophila psittaci, strain 5BS 333 ASE_00064 RNase P RNA, Clostridium sporogenes, strain 388 RNase P RNA Unknown RNase P Database Clostridium sporogenes, strain 388 302 ASE_00065 RNase P RNA, Chlamydia suis, strain R22 RNase P RNA Unknown RNase P Database Chlamydia suis, strain R22 394 ASE_00066 RNase P RNA, Chlorobium tepidum, strain TLS RNase P RNA Unknown RNase P Database Chlorobium tepidum, strain TLS 381

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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