RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Group I Intron Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 152 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00718 a.I1.m.S.luteus.B4.LSU.2500 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.B4.LSU.2500 617 CRW_00719 a.I1.m.S.luteus.C2.LSU.1685 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.C2.LSU.1685 679 CRW_00720 a.I1.m.S.luteus.C2.LSU.1949 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.C2.LSU.1949 646 CRW_00721 a.I1.m.S.pombe.B1.OX1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.pombe.B1.OX1 343 CRW_00722 a.I1.m.S.sclerotiorum.C2.SSU.570 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.sclerotiorum.C2.SSU.570 1399 CRW_00723 a.I1.m.T.papilionaceus.B2.LSU.1939 GI Intron Unknown Gutell Lab CRW Site a.I1.m.T.papilionaceus.B2.LSU.1939 1780 CRW_00813 b.I1.e.B.fuscopurpurea.1.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.B.fuscopurpurea.1.C1.SSU.516 1031 CRW_00814 b.I1.e.B.fuscopurpurea.7.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.B.fuscopurpurea.7.C1.SSU.516 503 CRW_00815 b.I1.e.B.fuscopurpurea.8.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.B.fuscopurpurea.8.C1.SSU.516 566 CRW_00816 b.I1.e.Bangia.sp.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.Bangia.sp.C1.SSU.516 537

Analyse the 152 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 152 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 152 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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