RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Group II Intron Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 42 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00738 a.I2.c.N.tabacum.B.pD.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.c.N.tabacum.B.pD.i1 759 CRW_00739 a.I2.c.N.tabacum.B.RPC1.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.c.N.tabacum.B.RPC1.i1 755 CRW_00740 a.I2.c.N.tabacum.B.S16.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.c.N.tabacum.B.S16.i1 990 CRW_00741 a.I2.c.N.tabacum.B.trnG.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.c.N.tabacum.B.trnG.i1 708 CRW_00742 a.I2.m.A.aegerita.B.LSU.2059 GII Intron Unknown Gutell Lab CRW Site a.I2.m.A.aegerita.B.LSU.2059 1857 CRW_00743 a.I2.m.C.parasitica.B.SSU.952 GII Intron Unknown Gutell Lab CRW Site a.I2.m.C.parasitica.B.SSU.952 2110 CRW_00744 a.I2.m.K.lactis.A.OX1.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.m.K.lactis.A.OX1.i1 2621 CRW_00745 a.I2.m.M.polymorpha.A.SSU.911 GII Intron Unknown Gutell Lab CRW Site a.I2.m.M.polymorpha.A.SSU.911 1640 CRW_00746 a.I2.m.M.polymorpha.B.trnS.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.m.M.polymorpha.B.trnS.i1 1050 CRW_00747 a.I2.m.P.anserina.A.ND5.i4 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.anserina.A.ND5.i4 2729

Analyse the 42 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 42 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 42 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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